Successfully complete one of the following tasks to get a trophy:
- Transmission (Bronze): Enter the body.
- Diving Deeper (Bronze): Complete the 1st of 5 worlds.
- Loco Motion (Bronze): Beat a level using only movement parts.
- Cold Blooded (Bronze): Kill 25 nanite enemies that emerge when you kill larger organisms.
- Fully Buffed (Silver): Equip a bot with only max level parts.
- Amoxicillin (Silver): Kill 1000 Bacteria.
- Fullerene (Silver): Collect all 20 Bucky Balls.
- Up and Atom (Silver): Amass 50,000 Atoms.
- Micromania (Silver): Collect 'em all - parts, that is.
- Survivor (Silver): Beat 3 rounds in Challenge Mode.
- Team Player (Silver): Kill 25 enemies while using the Coop Link Gun.
Additionally, there is one secret trophy:
- Alive or Dead? (Silver): Find the source of the hostiles and destroy it.